# Bioconductor-Friendly Multithreaded BAM Processing

## Documentation for package ‘BamScale’ version 0.99.14

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

bam_count | Count BAM records with Bioconductor-compatible filtering
bam_coverage | Per-base coverage, aggregated in C++
bam_coverage_bigwig | Write per-base coverage to a bigWig, computed in C++
bam_read | Fast BAM reading with Bioconductor-compatible arguments
decode_compact_qual | Decode compact BamScale quality output
decode_compact_seq | Decode compact BamScale sequence output
decode_seqqual_compact | Decode compact 'seq' and 'qual' columns in BamScale output
fragment_sizes | Fragment-size distribution, aggregated in C++
mapq_dist | Mapping-quality (MAPQ) distribution, aggregated in C++