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chromhmmData

This is the released version of chromhmmData; for the devel version, see chromhmmData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

Chromosome Size, Coordinates and Anchor Files

DOI: 10.18129/B9.bioc.chromhmmData

Bioconductor version: Release (3.23)

Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

Author: Mahmoud Ahmed [aut, cre] ORCID: 0000-0002-4377-6541

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("chromhmmData")):

Mahmoud Ahmed. chromhmmData: Chromosome Size, Coordinates and Anchor Files. doi:10.18129/B9.bioc.chromhmmData, R package version 0.99.2, https://bioconductor.org/packages/chromhmmData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromhmmData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromhmmData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.