sfi

This is the released version of sfi; for the devel version, see sfi.

All versions

3.24 (devel), 3.23 (release)

Data analysis for Single File Injections (SFIs) mode LC-MS analysis

Bioconductor version: Release (3.23)

Data analysis for Single File Injections(SFIs) mode LC-MS analysis. In SFIs mode, pooled samples are initially injected to serve as reference peaks for subsequent analyses. Repeated injections of individual samples are then performed at fixed time intervals using isocratic elution. This package provides the functions to analyze data from SFIs mode including peak picking and peak reassignment.

Author: Miao YU [aut, cre] ORCID: 0000-0002-2804-6014

Maintainer: Miao YU <yufreecas at gmail.com>

Citation (from within R, enter citation("sfi")):

Miao YU. sfi: Data analysis for Single File Injections (SFIs) mode LC-MS analysis. doi:10.18129/B9.bioc.sfi, R package version 1.0.0, https://bioconductor.org/packages/sfi.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sfi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sfi")

sfi workflow	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FeatureExtraction, MassSpectrometry, Metabolomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.23 (R-4.6) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 4.5.0)
Imports	Rcpp, enviGCMS, stats, mzR, rmarkdown, methods, SummarizedExperiment, S4Vectors
System Requirements
URL	https://github.com/yufree/sfi
Bug Reports	https://github.com/yufree/sfi/issues/new

Suggests	knitr, data.table, BiocStyle, ggplot2, MsCoreUtils, testthat (>= 3.0.0)
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sfi_1.0.0.tar.gz
Windows Binary (x86_64)	sfi_1.0.0.zip
macOS Binary (big-sur-x86_64)	sfi_1.0.0.tgz
macOS Binary (sonoma-arm64)	sfi_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sfi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sfi
Package Short Url	https://bioconductor.org/packages/sfi/
Package Downloads Report	Download Stats