ipdDb
This is the released version of ipdDb; for the devel version, see ipdDb.
IPD IMGT/HLA and IPD KIR database for Homo sapiens
Bioconductor version: Release (3.23)
All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.
Author: Steffen Klasberg
Maintainer: Steffen Klasberg <klasberg at dkms-lab.de>
citation("ipdDb")):Steffen Klasberg. ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens. doi:10.18129/B9.bioc.ipdDb, R package version 1.30.0, https://bioconductor.org/packages/ipdDb.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ipdDb")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ipdDb")| ipdDb | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), methods, AnnotationDbi (>= 1.43.1), AnnotationHub |
| Imports | Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat |
| System Requirements | |
| URL | https://github.com/DKMS-LSL/ipdDb |
| Bug Reports | https://github.com/DKMS-LSL/ipdDb/issues/new |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ipdDb_1.30.0.tar.gz |
| Windows Binary (x86_64) | ipdDb_1.30.0.zip |
| macOS Binary (big-sur-x86_64) | ipdDb_1.30.0.tgz |
| macOS Binary (sonoma-arm64) | ipdDb_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ipdDb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ipdDb |
| Package Short Url | https://bioconductor.org/packages/ipdDb/ |
| Package Downloads Report | Download Stats |