bluster
This is the released version of bluster; for the devel version, see bluster.
Clustering Algorithms for Bioconductor
Bioconductor version: Release (3.23)
Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.
Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb], Basil Courbayre [ctb], Tuomas Borman [ctb], Leo Lahti [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("bluster")):Aaron Lun. bluster: Clustering Algorithms for Bioconductor. doi:10.18129/B9.bioc.bluster, R package version 1.22.0, https://bioconductor.org/packages/bluster.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bluster")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bluster")| 1. Clustering algorithms | HTML | R Script |
| 2. Clustering diagnostics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (6 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors |
| System Requirements | C++17 |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster |
| Linking To | Rcpp, assorthead |
| Enhances | |
| Depends On Me | OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows, scrapbook, SingleRBook |
| Imports Me | BatChef, Canek, chevreulProcess, clustSIGNAL, concordexR, dandelionR, jrSiCKLSNMF, jvecfor, mia, miaDash, MPAC, poem, scDblFinder, scDiagnostics, scran, scTypeEval, Voyager |
| Suggests Me | anglemania, batchelor, ChromSCape, Coralysis, dittoSeq, GSVA, Ibex, mbkmeans, miaViz, MOSim, mumosa, OMA, scLANE, sketchR, spatialHeatmap, SuperCell, SuperCellCyto |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bluster_1.22.0.tar.gz |
| Windows Binary (x86_64) | bluster_1.22.0.zip |
| macOS Binary (big-sur-x86_64) | bluster_1.22.0.tgz |
| macOS Binary (sonoma-arm64) | bluster_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bluster |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bluster |
| Package Short Url | https://bioconductor.org/packages/bluster/ |
| Package Downloads Report | Download Stats |