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alabaster.base

This is the released version of alabaster.base; for the devel version, see alabaster.base.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Save Bioconductor Objects to File


Bioconductor version: Release (3.23)

Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.base")):

Aaron Lun. alabaster.base: Save Bioconductor Objects to File. doi:10.18129/B9.bioc.alabaster.base, R package version 1.12.1, https://bioconductor.org/packages/alabaster.base.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.base")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.base")
Saving and loading artifacts HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews DataImport, DataRepresentation, Software
Version1.12.1
In Bioconductor sinceBioC 3.17 (R-4.3) (3.5 years)
License MIT + file LICENSE
Depends
Imports alabaster.schemas, methods, utils, S4Vectors, rhdf5 (>= 2.47.6), jsonlite, jsonvalidate, Rcpp
System RequirementsC++17, GNU make
URLhttps://github.com/ArtifactDB/alabaster.base
Bug Reportshttps://github.com/ArtifactDB/alabaster.base/issues
See More
Suggests BiocStyle, rmarkdown, knitr, testthat, digest, Matrix, alabaster.matrix
Linking To Rcpp, assorthead (>= 1.1.2), Rhdf5lib
Enhances
Depends On Me alabaster, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.sfe, alabaster.spatial, alabaster.string, alabaster.vcf
Imports Me celldex, chevreulShiny, scRNAseq
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.base_1.12.1.tar.gz
Windows Binary (x86_64) alabaster.base_1.12.1.zip (64-bit only)
macOS Binary (big-sur-x86_64) alabaster.base_1.11.1.tgz
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/alabaster.base
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/alabaster.base
Package Short Url https://bioconductor.org/packages/alabaster.base/
Package Downloads ReportDownload Stats
Old Source Packages for BioC 3.23Source Archive