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MBAmethyl

This is the released version of MBAmethyl; for the devel version, see MBAmethyl.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Model-based analysis of DNA methylation data

DOI: 10.18129/B9.bioc.MBAmethyl

Bioconductor version: Release (3.23)

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Citation (from within R, enter citation("MBAmethyl")):

Tao Wang, Mengjie Chen. MBAmethyl: Model-based analysis of DNA methylation data. doi:10.18129/B9.bioc.MBAmethyl, R package version 1.46.0, https://bioconductor.org/packages/MBAmethyl.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBAmethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")

Details

Package Archives

Follow Installation instructions to use this package in your R session.