ISoLDE

This is the released version of ISoLDE; for the devel version, see ISoLDE.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Integrative Statistics of alleLe Dependent Expression

Bioconductor version: Release (3.23)

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Author: Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]

Maintainer: Christelle Reynès <christelle.reynes at igf.cnrs.fr>

Citation (from within R, enter citation("ISoLDE")):

Christelle Reynès, Marine Rohmer, Guilhem Kister. ISoLDE: Integrative Statistics of alleLe Dependent Expression. doi:10.18129/B9.bioc.ISoLDE, R package version 1.40.0, https://bioconductor.org/packages/ISoLDE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ISoLDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Epigenetics, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Genetics, ImmunoOncology, MathematicalBiology, MultipleComparison, RNASeq, SNP, Sequencing, Software, Transcription
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL (>= 2.0)
Depends	R (>= 3.3.0), graphics, grDevices, stats, utils
Imports
System Requirements
URL	www.r-project.org

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ISoLDE_1.40.0.tar.gz
Windows Binary (x86_64)	ISoLDE_1.40.0.zip
macOS Binary (big-sur-x86_64)	ISoLDE_1.40.0.tgz
macOS Binary (sonoma-arm64)	ISoLDE_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ISoLDE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ISoLDE
Package Short Url	https://bioconductor.org/packages/ISoLDE/
Package Downloads Report	Download Stats