EBSEA

This is the released version of EBSEA; for the devel version, see EBSEA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: Release (3.23)

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

Arfa Mehmood, Asta Laiho, Laura L. Elo. EBSEA: Exon Based Strategy for Expression Analysis of genes. doi:10.18129/B9.bioc.EBSEA, R package version 1.40.0, https://bioconductor.org/packages/EBSEA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")

EBSEA	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, Sequencing, Software
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-2
Depends	R (>= 4.0.0)
Imports	DESeq2, graphics, stats, EmpiricalBrownsMethod
System Requirements
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
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Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EBSEA_1.40.0.tar.gz
Windows Binary (x86_64)	EBSEA_1.40.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	EBSEA_1.40.0.tgz
macOS Binary (sonoma-arm64)	EBSEA_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSEA
Package Short Url	https://bioconductor.org/packages/EBSEA/
Package Downloads Report	Download Stats