addPerCellQC	reexports
addPerFeatureQC	reexports
aggregateAcrossCells	reexports
aggregateAcrossFeatures	reexports
annotateBMFeatures	annotateBMFeatures
bootstraps	bootstraps
bootstraps,SingleCellExperiment-method	bootstraps
bootstraps<-	bootstraps
bootstraps<-,SingleCellExperiment,array-method	bootstraps
calculateAverage	reexports
calculateCPM	reexports
calculateDiffusionMap	defunct
calculateDiffusionMap,ANY-method	defunct
calculateFPKM	reexports
calculateMDS	runMDS
calculateMDS,ANY-method	runMDS
calculateMDS,SingleCellExperiment-method	runMDS
calculateMDS,SummarizedExperiment-method	runMDS
calculateMultiUMAP	runMultiUMAP
calculateMultiUMAP,ANY-method	runMultiUMAP
calculateMultiUMAP,SingleCellExperiment-method	runMultiUMAP
calculateMultiUMAP,SummarizedExperiment-method	runMultiUMAP
calculateNMF	runNMF
calculateNMF,ANY-method	runNMF
calculateNMF,SingleCellExperiment-method	runNMF
calculateNMF,SummarizedExperiment-method	runNMF
calculatePCA	runPCA
calculatePCA,ANY-method	runPCA
calculatePCA,SingleCellExperiment-method	runPCA
calculatePCA,SummarizedExperiment-method	runPCA
calculateQCMetrics	defunct
calculateTPM	reexports
calculateTSNE	runTSNE
calculateTSNE,ANY-method	runTSNE
calculateTSNE,SingleCellExperiment-method	runTSNE
calculateTSNE,SummarizedExperiment-method	runTSNE
calculateUMAP	runUMAP
calculateUMAP,ANY-method	runUMAP
calculateUMAP,SingleCellExperiment-method	runUMAP
calculateUMAP,SummarizedExperiment-method	runUMAP
categoricalHlines	categoricalHlines
categoricalHlinesNamed	categoricalHlines
centreSizeFactors	defunct
computeLibraryFactors	reexports
computeMedianFactors	reexports
defunct	defunct
exprs	accessors
exprs,SingleCellExperiment-method,	accessors
exprs<-,SingleCellExperiment,ANY-method	accessors
fpkm	accessors
fpkm,SingleCellExperiment-method	accessors
fpkm<-	accessors
fpkm<-,SingleCellExperiment,ANY-method	accessors
getBMFeatureAnnos	annotateBMFeatures
getExplanatoryPCs	getExplanatoryPCs
getVarianceExplained	getVarianceExplained
getVarianceExplained,ANY-method	getVarianceExplained
getVarianceExplained,SummarizedExperiment-method	getVarianceExplained
ggcells	ggsce
ggfeatures	ggsce
isOutlier	reexports
librarySizeFactors	reexports
logNormCounts	reexports
makePerCellDF	reexports
makePerFeatureDF	reexports
medianSizeFactors	reexports
mockSCE	reexports
multiplot	defunct
nexprs	nexprs
nexprs,ANY-method	nexprs
nexprs,SummarizedExperiment-method	nexprs
normalize,SingleCellExperiment-method	defunct
normalizeCounts	reexports
norm_exprs	accessors
norm_exprs,SingleCellExperiment-method	accessors
norm_exprs<-	accessors
norm_exprs<-,SingleCellExperiment,ANY-method	accessors
numDetectedAcrossCells	reexports
numDetectedAcrossFeatures	reexports
perCellQCMetrics	reexports
perFeatureQCMetrics	reexports
plotColData	plotColData
plotDiffusionMap	plot_reddim
plotDots	plotDots
plotExplanatoryPCs	plotExplanatoryPCs
plotExplanatoryVariables	plotExplanatoryVariables
plotExpression	plotExpression
plotGroupedHeatmap	plotGroupedHeatmap
plotHeatmap	plotHeatmap
plotHighestExprs	plotHighestExprs
plotMDS	plot_reddim
plotNMF	plot_reddim
plotPCA	plot_reddim
plotPCA,SingleCellExperiment-method	plot_reddim
plotPCASCE	plot_reddim
plotPlatePosition	plotPlatePosition
plotReducedDim	plotReducedDim
plotRLE	plotRLE
plotRLE,SingleCellExperiment-method	plotRLE
plotRowData	plotRowData
plotScater	plotScater
plotTSNE	plot_reddim
plotUMAP	plot_reddim
plotXY	plotXY
projectReducedDim	projectReducedDim
projectReducedDim,matrix-method	projectReducedDim
projectReducedDim,SummarizedExperiment-method	projectReducedDim
quickPerCellQC	reexports
readSparseCounts	reexports
Reduced dimension plots	plot_reddim
reexports	reexports
retrieveCellInfo	retrieveCellInfo
retrieveFeatureInfo	retrieveFeatureInfo
runColDataPCA	runColDataPCA
runDiffusionMap	defunct
runMDS	runMDS
runMultiUMAP	runMultiUMAP
runNMF	runNMF
runPCA	runPCA
runPCA,SingleCellExperiment-method	runPCA
runTSNE	runTSNE
runUMAP	runUMAP
scater-pkg	scater-pkg
scater-plot-args	scater-plot-args
SCESet	SCESet
SCESet-class	SCESet
stand_exprs	accessors
stand_exprs,SingleCellExperiment-method,	accessors
stand_exprs<-	accessors
stand_exprs<-,SingleCellExperiment,ANY-method	accessors
sumCountsAcrossCells	reexports
sumCountsAcrossFeatures	reexports
toSingleCellExperiment	toSingleCellExperiment
uniquifyFeatureNames	reexports
updateSCESet	toSingleCellExperiment
