Detecting Uniparental Disomy through NGS trio data

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Documentation for package ‘UPDhmm’ version 1.7.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

calculateEvents	Calculate UPD events in trio VCFs.
collapseEvents	Collapse events per sample and chromosome
hmm	HMM data for predicting UPD events in trio genomic data
identifyRecurrentRegions	Identify recurrent genomic regions across samples
markRecurrentRegions	Annotate regions as recurrent or non-recurrent
vcfCheck	Check quality parameters (optional), change IDs and encode genotypes numerically