# StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

## Documentation for package ‘StatescopeR’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

barplot_stateloadings | Create a barplot of top stateloadings
BLADE_deconvolution | Run BLADE deconvolution
create_signature | Create scRNAseq Signature
fetch_signature | Fetch scRNAseq Signature
fraction_eval | Create a barplot of TRUE vs estimated cfs
fraction_heatmap | Create a heatmap of the estimated fractions
gather_true_fractions | Gather true fractions
Refinement | Run Refinement
select_genes | Select genes using AutoGeneS
StateDiscovery | Run StateDiscovery
statescope | Python environments