citHeader("If you use OncoSimulR, please cite the OncoSimulR Bioinformatics paper.",
          " OncoSimulR has been used in three large",
          " comparative studies of methods to infer restrictions in",
          " the order of accumulation of mutations (cancer progression models)",
          " published in PLoS Computational Biology, Bioinformatics and BMC Bioinformatics; you might want to cite those too,",
          " if appropriate, such as when referring to using evolutionary simulations",
          " to assess oncogenetic tree/cancer progression methods performance.")


bibentry("Article",
         author = "R Diaz-Uriarte",
         title = "OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.",
         journal = "Bioinformatics",
         year = "2017",
         volume = "33",
         number = "12",
         pages = "1898--1899",
         doi = "10.1093/bioinformatics/btx077",
         publisher = "Oxford University Press",
         url = " https://doi.org/10.1093/bioinformatics/btx077",
         textVersion = paste("R Diaz-Uriarte.",
                             "OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.",
                             " 2017. Bioinformatics, 33, 1898--1899. https://doi.org/10.1093/bioinformatics/btx077.")
         )


bibentry("Article",
         author = "R Diaz-Uriarte and C Vasallo",
         title = "Every which way? On predicting tumor evolution using cancer progression models",
         journal = "PLoS Computational Biology",
         year = "2019",
         volume = "15",
         number = "8",
         doi = "10.1371/journal.pcbi.1007246",
         URL = "https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007246",
         textVersion = paste("R Diaz-Uriarte and C. Vasallo.",
                             "Every which way? On predicting tumor evolution using cancer progression models",
                             "2019",
                             "PLoS Computational Biology",
                             "https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007246")
)


bibentry("Article",
         author = "R Diaz-Uriarte",
         title = "Cancer progression models and fitness landscapes: a many-to-many relationship",
         journal = "Bioinformatics",
         year = "2018",
         doi = "10.1093/bioinformatics/btx663",
         url = "https://academic.oup.com/bioinformatics/article/34/5/836/4557185",
         volume = "34",
         number = "5",
         pages = "836--844",
         textVersion = paste("R Diaz-Uriarte.",
                             "Cancer progression models and fitness landscapes: a many-to-many relationship",
                             "2017", "Bioinformatics.",
                             "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btx663/")
)


bibentry("Article",
         author = "R Diaz-Uriarte",
         title = "Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling",
         journal = "BMC Bioinformatics",
         year = "2015",
         doi = "10.1186/s12859-015-0466-7",
         url = "https://link.springer.com/article/10.1186/s12859-015-0466-7",
         volume = "16",
         number = "41",
         textVersion = paste("R Diaz-Uriarte.",
             "Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling",
             "2015. BMC Bioinformatics, 16(41).")
         )
