## Version 0.99.3 (2026-02-24)

* Removed `print` from README.

* Fixed minor bug where background offset cannot be calculated because an entire gene gets filtered out because of low qv.

* `n_inits` can now be tuned in the `denoist()` function for speed.

## Version 0.99.2 (2026-02-05)

* Removed commented out chunks during development.

* Added `verbose` option to make progress messages off by default.

* Replaced `dplyr`, `tidyr`, and `tibble` dependency with base R `xtabs`.

* Specified functions imported from `flexmix` instead of importing the whole package.

* Updated vignette to use `BiocStyle`.

* Trimmed README content for a more pleasant reading experience.

* Vignette now uses an even smaller dataset.

## Version 0.99.1 (2026-01-19)

* `local_offset_distance_with_background` can now handle non-Xenium transcript
data with no QV column without data modification from user.

## Version 0.99.0 (2025-12-01)

* Submitted to Bioconductor
