Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.53.0
Date: 2021-11-22
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:12:28 UTC
RemoteUrl: https://github.com/bioc/HMMcopy
RemoteRef: HEAD
RemoteSha: bd669261d3b5cdf27fd5438abd1ce6465e8cc49d
NeedsCompilation: yes
Packaged: 2026-01-26 08:12:56 UTC; root
Built: R 4.6.0; aarch64-apple-darwin23; 2026-01-26 08:15:04 UTC; unix
