.logBH	logBH
bootstrapCluster	defunct
buildKNNGraph	buildSNNGraph
buildKNNGraph,ANY-method	buildSNNGraph
buildKNNGraph,SingleCellExperiment-method	buildSNNGraph
buildSNNGraph	buildSNNGraph
buildSNNGraph,ANY-method	buildSNNGraph
buildSNNGraph,SingleCellExperiment-method	buildSNNGraph
buildSNNGraph,SummarizedExperiment-method	buildSNNGraph
calculateSumFactors	computeSumFactors
clusterCells	clusterCells
clusterKNNGraph	defunct
clusterModularity	defunct
clusterPurity	defunct
clusterSNNGraph	defunct
coassignProb	defunct
combineBlocks	combineBlocks
combineCV2	combineVar
combineMarkers	combineMarkers
combinePValues	defunct
combineVar	combineVar
computeMinRank	computeMinRank
computeSumFactors	computeSumFactors
connectClusterMST	defunct
convertTo	convertTo
correlateGenes	correlateGenes
correlateNull	correlateNull
correlatePairs	correlatePairs
correlatePairs,ANY-method	correlatePairs
correlatePairs,SummarizedExperiment-method	correlatePairs
createClusterMST	defunct
cyclone	cyclone
cyclone,ANY-method	cyclone
cyclone,SummarizedExperiment-method	cyclone
decideTestsPerLabel	decideTestsPerLabel
decomposeVar	defunct
defunct	defunct
denoisePCA	denoisePCA
denoisePCANumber	denoisePCA
DM	DM
doubletCells	defunct
doubletCluster	defunct
doubletRecovery	defunct
findMarkers	findMarkers
findMarkers,ANY-method	findMarkers
findMarkers,SingleCellExperiment-method	findMarkers
findMarkers,SummarizedExperiment-method	findMarkers
fitTrendCV2	fitTrendCV2
fitTrendPoisson	fitTrendPoisson
fitTrendVar	fitTrendVar
fixedPCA	fixedPCA
getClusteredPCs	getClusteredPCs
getDenoisedPCs	denoisePCA
getDenoisedPCs,ANY-method	denoisePCA
getDenoisedPCs,SummarizedExperiment-method	denoisePCA
getMarkerEffects	getMarkerEffects
getTopHVGs	getTopHVGs
getTopMarkers	getTopMarkers
improvedCV2	defunct
makeTechTrend	defunct
modelGeneCV2	modelGeneCV2
modelGeneCV2,ANY-method	modelGeneCV2
modelGeneCV2,SingleCellExperiment-method	modelGeneCV2
modelGeneCV2,SummarizedExperiment-method	modelGeneCV2
modelGeneCV2WithSpikes	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,ANY-method	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,SingleCellExperiment-method	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,SummarizedExperiment-method	modelGeneCV2WithSpikes
modelGeneVar	modelGeneVar
modelGeneVar,ANY-method	modelGeneVar
modelGeneVar,SingleCellExperiment-method	modelGeneVar
modelGeneVar,SummarizedExperiment-method	modelGeneVar
modelGeneVarByPoisson	modelGeneVarByPoisson
modelGeneVarByPoisson,ANY-method	modelGeneVarByPoisson
modelGeneVarByPoisson,SingleCellExperiment-method	modelGeneVarByPoisson
modelGeneVarByPoisson,SummarizedExperiment-method	modelGeneVarByPoisson
modelGeneVarWithSpikes	modelGeneVarWithSpikes
modelGeneVarWithSpikes,ANY-method	modelGeneVarWithSpikes
modelGeneVarWithSpikes,SingleCellExperiment-method	modelGeneVarWithSpikes
modelGeneVarWithSpikes,SummarizedExperiment-method	modelGeneVarWithSpikes
multiBlockNorm	defunct
multiBlockVar	defunct
multiMarkerStats	multiMarkerStats
orderClusterMST	defunct
overlapExprs	defunct
pairwiseBinom	pairwiseBinom
pairwiseBinom,ANY-method	pairwiseBinom
pairwiseBinom,SingleCellExperiment-method	pairwiseBinom
pairwiseBinom,SummarizedExperiment-method	pairwiseBinom
pairwiseTTests	pairwiseTTests
pairwiseTTests,ANY-method	pairwiseTTests
pairwiseTTests,SingleCellExperiment-method	pairwiseTTests
pairwiseTTests,SummarizedExperiment-method	pairwiseTTests
pairwiseWilcox	pairwiseWilcox
pairwiseWilcox,ANY-method	pairwiseWilcox
pairwiseWilcox,SingleCellExperiment-method	pairwiseWilcox
pairwiseWilcox,SummarizedExperiment-method	pairwiseWilcox
parallelPCA	defunct
pseudoBulkDGE	pseudoBulkDGE
pseudoBulkDGE,ANY-method	pseudoBulkDGE
pseudoBulkDGE,SummarizedExperiment-method	pseudoBulkDGE
pseudoBulkSpecific	pseudoBulkSpecific
pseudoBulkSpecific,ANY-method	pseudoBulkSpecific
pseudoBulkSpecific,SummarizedExperiment-method	pseudoBulkSpecific
quickCluster	quickCluster
quickCluster,ANY-method	quickCluster
quickCluster,SummarizedExperiment-method	quickCluster
quickPseudotime	defunct
quickSubCluster	quickSubCluster
quickSubCluster,ANY-method	quickSubCluster
quickSubCluster,SingleCellExperiment-method	quickSubCluster
quickSubCluster,SummarizedExperiment-method	quickSubCluster
rhoToPValue	rhoToPValue
sandbag	sandbag
sandbag,ANY-method	sandbag
sandbag,SummarizedExperiment-method	sandbag
scaledColRanks	scaledColRanks
scoreMarkers	scoreMarkers
scoreMarkers,ANY-method	scoreMarkers
scoreMarkers,SingleCellExperiment-method	scoreMarkers
scoreMarkers,SummarizedExperiment-method	scoreMarkers
scran-gene-selection	gene_selection
summarizeTestsPerLabel	decideTestsPerLabel
summaryMarkerStats	summaryMarkerStats
summaryMarkerStats,ANY-method	summaryMarkerStats
summaryMarkerStats,SummarizedExperiment-method	summaryMarkerStats
technicalCV2	defunct
testLinearModel	testLinearModel
testLinearModel,ANY-method	testLinearModel
testLinearModel,SummarizedExperiment-method	testLinearModel
testPseudotime	defunct
testVar	defunct
trendVar	defunct
