Identification and classification of plant transcription factors

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Documentation for package ‘planttfhunter’ version 1.12.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

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annotate_domains	Annotate protein sequences with domains used for TF classification
classify_tfs	Identify TFs and classify them in families
get_tf_counts	Get TF frequencies for each species as a 'SummarizedExperiment' object
gsu	Protein sequences of the algae species Galdieria sulphuraria
gsu_annotation	Domain annotation for the algae species Galdieria sulphuraria The data set was created using the function 'annotate_domains()'.
hmmer_is_installed	Check if HMMER is installed
planttfclass_scheme	Correspondence table between TAPscan and Plant-TFClass
planttfdb_scheme	Data frame of PlantTFDB's TF family classification scheme
tapscan_scheme	Data frame of TAPscan's classification scheme
tap_class	Classes of transcription-associated proteins (TAPs) in TAPscan