Package: oposSOM
Title: Comprehensive analysis of transcriptome data
Version: 2.30.0
Description: This package translates microarray expression data into
        metadata of reduced dimension. It provides various
        sample-centered and group-centered visualizations, sample
        similarity analyses and functional enrichment analyses. The
        underlying SOM algorithm combines feature clustering,
        multidimensional scaling and dimension reduction, along with
        strong visualization capabilities. It enables extraction and
        description of functional expression modules inherent in the
        data.
Depends: R (>= 4.0.0), igraph (>= 1.0.0)
Imports: fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape, biomaRt,
        Biobase, RcppParallel, Rcpp, methods, graph, XML, png, RCurl
LinkingTo: RcppParallel, Rcpp
License: GPL (>=2)
Author: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>, Hoang Thanh
        Le <le@izbi.uni-leipzig.de> and Martin Kalcher
        <mkalcher@porkbox.net>
Maintainer: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>
URL: http://som.izbi.uni-leipzig.de
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        DataRepresentation, Visualization
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:39:21 UTC
RemoteUrl: https://github.com/bioc/oposSOM
RemoteRef: RELEASE_3_23
RemoteSha: 2839a282689f3e83189a93bd7fdb61aff2962688
NeedsCompilation: yes
Packaged: 2026-05-03 16:10:14 UTC; root
Built: R 4.6.0; x86_64-apple-darwin20; 2026-05-03 16:36:13 UTC; unix
