Package: mzR
Type: Package
Title: parser for netCDF, mzXML and mzML and mzIdentML files (mass
        spectrometry data)
Version: 2.46.0
Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou,
        Johannes Rainer
Authors@R: c(
    person("Steffen", "Neumann", email="sneumann@ipb-halle.de", role=c("aut","cre")),
    person("Laurent", "Gatto", email="laurent.gatto@uclouvain.be", role=c("aut")),
    person("Qiakng", "Kou", email="qkou@umail.iu.edu", role=c("aut")),
    person("David","Rauh",email="drauh@ipb-halle.de", role=c("ctb")),
    person("Sascha","Manier",email="sascha.manier@uni-saarland.de", role=c("ctb")),
    person(given = "Adriano",
           family = "Rutz",
           email = "adafede@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0003-0443-9902")),
    person(given = "Johannes", family = "Rainer",
           email = "Johannes.Rainer@eurac.edu",
           role = "aut",
           comment = c(ORCID = "0000-0002-6977-7147"))
    )
Description: mzR provides a unified API to the common file formats and
        parsers available for mass spectrometry data. It comes with a
        subset of the proteowizard library for mzXML, mzML and
        mzIdentML. The netCDF reading code has previously been used in
        XCMS.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 4.0.0), Rcpp (>= 0.10.1), methods, utils
Imports: Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3),
        ncdf4
Suggests: MsDataHub, RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML,
        rmarkdown
VignetteBuilder: knitr
LinkingTo: Rcpp, Rhdf5lib (>= 1.1.4)
RcppModules: Pwiz, Ident
SystemRequirements: C++11, GNU make
URL: https://github.com/sneumann/mzR/
BugReports: https://github.com/sneumann/mzR/issues/
biocViews: ImmunoOncology, Infrastructure, DataImport, Proteomics,
        Metabolomics, MassSpectrometry
RoxygenNote: 7.3.3
Config/pak/sysreqs: make libnetcdf-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:35:42 UTC
RemoteUrl: https://github.com/bioc/mzR
RemoteRef: RELEASE_3_23
RemoteSha: 7b9079d81400864455a68fb31842c73260451034
NeedsCompilation: yes
Packaged: 2026-04-29 13:06:57 UTC; root
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 17:48:56 UTC; unix
