BioVector               DNAVector, RNAVector, AAVector Objects and
                        BioVector Class
BioVector-class         BioVector, DNAVector, RNAVector and AAVector
                        Classes
computeROCandAUC        Compute Receiver Operating Characteristic And
                        Area Under The Curve
ControlInformation-class
                        KeBABS Control Information Class
CrossValidationResult-class
                        Cross Validation Result Class
CrossValidationResultAccessors
                        CrossValidationResult Accessors
evaluatePrediction      Evaluate Prediction
ExplicitRepresentation
                        Explicit Representation Dense and Sparse
                        Classes
ExplicitRepresentationAccessors
                        ExplicitRepresentation Accessors
gappyPairKernel         Gappy Pair Kernel
GappyPairKernel-class   Gappy Pair Kernel Class
genRandBioSeqs          Generate Random Biological Sequences
getExRep                Explict Representation
getFeatureWeights       Feature Weights
getPredictionProfile,BioVector-method
                        Calculation Of Predicition Profiles
getPredProfMixture,BioVector-method
                        Calculation Of Predicition Profiles for Mixture
                        Kernels
heatmap,PredictionProfile,missing-method
                        Heatmap Methods
KBModel-class           KeBABS Model Class
KBModelAccessors        KBModel Accessors
kbsvm,BioVector-method
                        KeBABS Training Methods
kebabsCollectInfo       Collect KeBABS Package Information
kebabsData              KeBABS Sequence Data
kebabsDemo              kebabs
KernelMatrix-class      Kernel Matrix Class
KernelMatrixAccessors   KernelMatrix Accessors
linearKernel            Linear Kernel
linWeight               Position Dependent Kernel
mismatchKernel          Mismatch Kernel
MismatchKernel-class    Mismatch Kernel Class
ModelSelectionResult-class
                        Model Selection Result Class
ModelSelectionResultAccessors
                        ModelSelectionResult Accessors
motifKernel             Motif Kernel
MotifKernel-class       Motif Kernel Class
performCrossValidation,KernelMatrix-method
                        KeBABS Cross Validation
performGridSearch       KeBABS Grid Search
performModelSelection   KeBABS Model Selection
plot,PredictionProfile,missing-method
                        Plot Prediction Profiles, Cross Validation
                        Result, Grid Search Performance Parameters and
                        Receiver Operating Characteristics
predict,KBModel-method
                        KeBABS Prediction Methods
PredictionProfile-class
                        Prediction Profile Class
PredictionProfileAccessors
                        PredictionProfile Accessors
predictSVM              SVM Access for Training and Prediction
ROCData-class           ROC Data Class
ROCDataAccessors        ROCData Accessors
seqKernelAsChar         Sequence Kernel
SequenceKernel-class    Sequence Kernel Class
show.BioVector          Display Various KeBABS Objects
showAnnotatedSeq        Annotation Specific Kernel
spectrumKernel          Spectrum Kernel
SpectrumKernel-class    Spectrum Kernel Class
SVMInformation-class    SVM Information Class
symmetricPairKernel     Symmetric Pair Kernel
SymmetricPairKernel-class
                        Symmetric Pair Kernel Class
