# Differential Expression Analysis for RNA-seq data through a robust variance component test

## Documentation for package ‘dearseq’ version 1.24.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

dearseq-package | dearseq: Differential Expression Analysis for RNA-seq data through a robust variance component test
baduel | Small portion of RNA-seq data from plant physiology study.
baduel_5gs | Small portion of RNA-seq data from plant physiology study.
baduel_gmt | Small portion of RNA-seq data from plant physiology study.
dearseq | dearseq: Differential Expression Analysis for RNA-seq data through a robust variance component test
dear_seq | Differential expression analyis of RNA-seq data through a variance component test
design | Small portion of RNA-seq data from plant physiology study.
dgsa_seq | Time-course Gene Set Analysis
expr_norm_corr | Small portion of RNA-seq data from plant physiology study.
PBT | PBT gene sets related to kidney transplant
PBT_gmt | PBT gene sets related to kidney transplant
permPvals | Exact permutation p-values
plot.dearseq | Plot method for dearseq objects
plot_hist_pvals | Plotting raw p-values histogram
plot_ord_pvals | Plot of gene-wise p-values
plot_weights | Plotting mean-variance fit for precision weights estimation
print.summary.dearseq | Summary method for dearseq objects
spaghettiPlot1GS | Spaghetti plot for Specific Gene Set
sp_weights | Non parametric local heteroscedasticity weights
summary.dearseq | Summary method for dearseq objects
vc_test_asym | Asymptotic variance component test statistic and p-value
vc_test_perm | Permutation-based variance component test statistic and p-value
voom_weights | Precision weights accounting for heteroscedasticity in RNA-seq count data