4eeceeb1f2c637b168dc8f86707bb960e076e18a71d981d2ee1805a26c3b5c4c 2187 DESCRIPTION
12b6828a2e29a6b8daf1885b8bb884ff336e638174c6dba610d3be0c5666847c 552 INDEX
684f34308386dbb437649220242fa059d607305c09630abc00d2c1b57feab4b8 1063 LICENSE
a0abbb0cc93385cba198fa09e2cc8f1ea6caf7d573994c0008f1b8584f6d35d3 805 Meta/Rd.rds
0d3db72570f090a40c93ca7c6b606c709d12ad62c9a446c067b48048a7237437 132 Meta/data.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
89a02910c14b12e69f8e021f92182828a1161b57964297ff21433447dd34ea4c 776 Meta/hsearch.rds
4500198c911c8ddb994c0404c348c254043dd85dcfc158c29fc2e83a58296188 307 Meta/links.rds
ab7e4ddc54052eb91b04e727e2c92ba06edf2d74df42831038775b2bd0505ede 253 Meta/nsInfo.rds
8bea6adabc4334c5eaedec8aed0050ab35ff60ea687abd4045923541f260d50e 1743 Meta/package.rds
6ae5e37111c90893a4fffc6652e7bfc74f4fbe5b700ca672797195a8bbd7d5d9 299 Meta/vignette.rds
4cc6272b8a7df7506fd969838dc2926491e312909f0da2fb601414f4f9b521d8 172 NAMESPACE
3c496efd81dd7094e01196f5a0a3d6f50d48c909ba3c734c4f9300acd0baa0f1 1509 NEWS.md
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/UPDhmm
8c8d80b493784efea941807eb4cb2e698c59ce502aff61582f3f7f95ba06016b 29060 R/UPDhmm.rdb
15b7ed40d5b8e9499cfc73e5ebb286564acb2863d226eff42ead5cdf1093d7cf 434 R/UPDhmm.rdx
e605faa41d337a74deb0ef9d74d5999621e3531667762010cb2fb36bfc5c2ec7 1093 README.md
7316080bf1d212445bebd38c207179877ed16c3168a1d442e3e4b2ccec40e888 499 data/hmm.rda
4277fa85133ea30cf44b5ef2f53a086e917c50892aa260b231b6074789e47401 5761 doc/UPDhmm.R
f6f23b1994095eb8d27c01fe55b2a5fee69c3d46a5141b9ab3422ace28aa037e 24531 doc/UPDhmm.Rmd
3181f5a67184cb0def057b0fd9a45e999c52f396547d3e4a75576a44876707b1 197199 doc/UPDhmm.html
b67232a8ec58d7169e14ca99714af0fe6fdbe117855f70c657fdbb76190d1c0c 2334 doc/index.html
6f50ca8151bd9124161e39b1f5b7d1b3107a152f6697505968bcc446767cc63e 96 doc/long-reads-processing.R
cc0342b0c0738b6b750ab42f93c8fd750bc03a409bc9c891c1a3eb50d3f2fabd 3356 doc/long-reads-processing.Rmd
61535b6aa4fb16cd2cdff1a0f5fae5cb9612d2f8b515d0153229de8b92aa4579 12291 doc/long-reads-processing.html
6f50ca8151bd9124161e39b1f5b7d1b3107a152f6697505968bcc446767cc63e 96 doc/preprocessing.R
cf4b44219f95b782949dda8dfb6fc5a646f5ee66c35f30a4710b84475493d8c7 5785 doc/preprocessing.Rmd
c912759446f9ccf7069506bf890d7057518bec11d329f424441762a2fe4aada8 18509 doc/preprocessing.html
0c637098b2b6bf44330a7e6127a30d46e6ca657f39920ec70ef70569ebabda85 630 extdata/SFARI.bed
043b14a35f9efa22af0ada819a9adc276d12d7acf36a5576b0c39125c7b8bbd5 173673 extdata/sample1.vcf.gz
320d8cd46cae89a9b5956b280c9df0b820f52e93440af039e9b406d3a2d22cc6 1952 extdata/sample2.vcf.gz
320d8cd46cae89a9b5956b280c9df0b820f52e93440af039e9b406d3a2d22cc6 1952 extdata/test.vcf.gz
043b14a35f9efa22af0ada819a9adc276d12d7acf36a5576b0c39125c7b8bbd5 173673 extdata/test_het_mat.vcf.gz
50dfce78b1825e04b2ad966c72256d34c30249d211a149ab6efa6de079656889 350 help/AnIndex
abab2a836d13a279ca84ee7349dc70cb2d6f1a549e899c1cec2d7bae683e8108 31454 help/UPDhmm.rdb
8bd96bf6c0abad96d114249e4416163b961b23ea3ca2e07aa218e2b2ab673987 446 help/UPDhmm.rdx
1650ba961011e0f3db5d5ded3c118308ff645955a026a605b47540eac508e227 222 help/aliases.rds
ae5d26f3e19dd4afcbab99bd422dc0c9c66aa083ec85ee75c22138a45617fbce 321 help/paths.rds
5d5b565ec6a18206fe540076493e53af7c4b91e33bb44a5345976668f56b0517 2072 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
2db5e2c5c7eb557eaab3a1cd5a318d138376dd576e843a3ac99d169e727c522b 177024 scripts/cnps.bed
1198a10dfbdc9c5ac4d8c869cfc6a8d571a6b730cb05734b0e1eda9992ae77f4 598 scripts/extractTrioNA19675.sh
f6204938c0c616713743f193c9f646e70927427b950e36bba071802d34586f9c 2684 scripts/getFilesExdata.sh
b09c96aaf4fb739b9b476b4d789b85f959216c866124bfa5f8dbe4c85dd493bb 4789 scripts/simulation3q.R
