DeaSet-class            DeaSet class
dim,TopNetwork-method   dimention of 'TopNetwork' object
Enrich-class            Enrich class
getResultsNames         Inference the name of results of DESeq analysis
                        by a formula (or model matrix) and sample
                        information
head,Score-method       head or tail of Score object
Lyme_GSE63085           Example RNAseq dataset [Human]
newDeaSet               DeaSet object creator
newTopNetwork           TopNetwork object creator
plot_Enrich             Plot results of FET/GSEA enrichment analysis
plotOrders              Compare the orders of two vectors
plotRegTarExpr          Plot regulator and its targets expression
plotSoftPower           Plot soft power for WGCNA analysis
print.Score             Print Score object
regenrich_diffExpr      Differential expression analysis step
regenrich_enrich        Enrichment analysis step
regenrich_network       Regulator-target network inference step
regenrich_rankScore     Regulator scoring and ranking
RegenrichSet            RegenrichSet object creator
RegenrichSet-class      RegenrichSet class
results_expr            Result accessor functions
Score-class             Score class
show,DeaSet-method      methods of generic function "show"
TFs                     Human gene regulators
TopNetwork-class        TopNetwork class
