821e27069f48fdefb14e1464a1a5dc78ca1edad1ccf8f8a7861556b623a6788f 524 CITATION
d5948fabcdad52593128cc2464342b039a2bcac91159c16733e96c08c31e116e 2910 DESCRIPTION
620ebb195f762af8eb5d84f68801e46f279f05925b34e120efe6dbd9ca546add 956 INDEX
3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986 35149 LICENSE
67b834fa728b4cf82e35bcf1ad896709576543cbd31f6842a7546a9ea73523e4 593 Meta/Rd.rds
436238b75749d3e554dd96210bde77c8e68f3106facee5dad002921896d085b9 272 Meta/data.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
820ba3b0d937b1443a8b5d3f138c05466c379af140834fa862f20850e7dfc9c3 568 Meta/hsearch.rds
02d6166f403140c9f4200e00f32c3c1e01212b3ac794201fecc6a32f4da9f48b 268 Meta/links.rds
7fb2acf1f133e926fda3728561b2908deede1fe1c1f1abf8ed42c78cb9d97c8a 799 Meta/nsInfo.rds
359812a610e19eceb9ca3d8fa3099f8a356d472c45933f2e659e4b86c1ce5b48 2237 Meta/package.rds
fd694c1d69a618c9a191be7d736ffac0fe1afe585734d399567ee1bd11a9115a 285 Meta/vignette.rds
e8382fc7590aa7c3fba819e21d81338a744c1b02118c690b5834d0209dcaa5b8 1363 NAMESPACE
949eab188e88b02f29baec36f1883bd10daa2af1e739df3dc8e3e69370317a0f 449 NEWS.Rd
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/LACE
40243ceb2812843895da215ab82e5012524c5afd6f41a70d9e7df38ec54e90b8 153956 R/LACE.rdb
52f848ef7037ad9d49abea57103e72068e3b830ed5f7602285ca09fa2eff7d70 978 R/LACE.rdx
6b4a36358337f70e25a18ccada225357114e458fae97a7fead48031590bc2484 4350 data/inference.RData
21fa2e87a1537a873d0c2d3b35ac91ec70f6bfa104991c8175fb755c6b3f4a76 2775 data/longitudinal_sc_variants.RData
e93e2cf624ae5ae0e4144136c9eae2ae841f2da2f69bdb1e3b701007dd911fe5 2281 doc/index.html
84ff262df11f7da88aebce5d477550ca4785d2d873c35b2ffef866c4c7e113ec 359 doc/v1_introduction.R
4927b85a41c97604bb6c10a3bd9b2a83b18895cdd609c12bf18725fe2077de62 1411 doc/v1_introduction.Rmd
4622b10468ec46631b3bb14871172982bf2974f7e37bcddc4530229c00bb3aac 4057 doc/v1_introduction.html
aa7c28b45e9c880e439a4e494934397d7bd0324e64118f7de307761a4e0def9b 1471 doc/v2_running_LACE.R
2604d9b453ce257c52547351687a0e3eeeca180c5540dfc69f0ff36ab9364f22 3979 doc/v2_running_LACE.Rmd
846a645c5f4b81837777feebed4afe0fe7e72f5c72c4c787d401b27cc013e6f6 295001 doc/v2_running_LACE.html
c1b36d9f4b22d76e728aa7ae1e349165ff45dd582cd3944cf2da6995b1f018c6 487 doc/v3_LACE_interface.R
be4f46730468c2d9ad5350991bf437def369232456b1f2b4f7e95c07ef0506d2 20382 doc/v3_LACE_interface.Rmd
76a44e1e5971aa86f872720a07fe42b49aeb20501a17c78826653404b7485392 1607787 doc/v3_LACE_interface.html
ad3b29262ecfb77df5f1710427cbb9fc3d65b2386c4968f16904388082816b1a 302 help/AnIndex
b38bcaca724fa9abf7c613cc00ac0afa203a024d30c803e24551558340ee8dd5 23411 help/LACE.rdb
9f7b7b10dc1ccd6c9c4ba14be54ddd1f1119d1078dd2618f86f7bdf11a540631 400 help/LACE.rdx
e3b1fe615494c3aedceb2684782b5f1a40980d4f6772e587ad6d057ecf0dcb61 195 help/aliases.rds
2049489c2e67b735abb1c28af457eab33984994a1f9c2f8ec6ce6e59597d7b56 297 help/paths.rds
214bccd9be9ae225eecdc2c045f277f5f6debdb755bfd7940ae1aff52d59a56a 2494 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
89d62f093415a0ac881ada3ec4e4dc25fc9e972b70f420558d170ecb86ca22f8 24455 htmlwidgets/LACE.js
28982fa735986497c4d210734a82133ee7c267c7487045421dbbb53ea8f98ce1 2267 htmlwidgets/LACE.yaml
5b0fbe5b7ad705f6a937c4998ad02f73d8f0d976fe231b74aef0ec996990c93a 160302 htmlwidgets/lib/bootstrap.min.css
79c599dd760cec0c1621a1af49d9a2a49da5d45e1b37d4575bace0a5e0226582 60044 htmlwidgets/lib/bootstrap.min.js
b12fb9d9bf3e651ad9d3f18b6d989c6da0f3166b9e11323b65a7ae9fa4a793ca 18989 htmlwidgets/lib/colorbrewer.js
ffcfe38ccac4686e1b92f51f0dbdf2259c3099b3895be6625ebe6e9d66d3ce5f 34370 htmlwidgets/lib/cytoscape-cxtmenu.js
4f6a8cf9da7a9ca207d2f986c1100752fc56baeb8eea5b711d9f7d200609630b 15156 htmlwidgets/lib/cytoscape-dagre.js
b57390825a47c7dda3345abd1ba753141f0cc52db5d10400abff96b9d697495a 15485 htmlwidgets/lib/cytoscape-popper.js
f794e622c4f66278c53cd81786fe4335f733aa46144e0384a9a7361949a81bf2 315220 htmlwidgets/lib/cytoscape.min.js
e884cbfed5210b425568ae686e26a3a14987b94f3b416c6febe6de4eadc04f12 10243 htmlwidgets/lib/d3-color.min.js
a9869e757114bcceb0c14723bdb6cee4d7499b833a60fe269b21000859901abc 7557 htmlwidgets/lib/d3-interpolate.min.js
05134c93bc0f002c7057797085c56d65a389cb92653e5a664ae9d76f35d6c854 19830 htmlwidgets/lib/d3-scale-chromatic.v1.min.js
e006ca2e38ba257711f5044f09f72868a87f1587ada36ab1a7e411b88fe514b9 151701 htmlwidgets/lib/d3.min.js
89fd23a151776db6dd47c9dc3efa6e28c9ffd4441747f54cf1940bea0b054442 6745 htmlwidgets/lib/d3.tip.v0.6.3.js
57e48d8af8c64f01c929e3b8f011fb8dbd1411045fdb1eba491cc612fab40eda 575094 htmlwidgets/lib/d3.v4.js
7ab0488aa2a0149590f57d3d0dee74333f69e400404fa9e24c7a1b0949092da9 651521 htmlwidgets/lib/dagre.min.js
b2215cce5830e2350b9d420271d9bd82340f664c3f60f0ea850f7e9c0392704e 247597 htmlwidgets/lib/jquery-2.1.4.js
1d049cbcdf97b9966225ab88d41ab62562d1c74e30e92cf149bb00248773e9be 14490 htmlwidgets/lib/jquery.dataTables.min.css
42c234455f4e7402659113172fb5bb02ffcbc5cb41bdf551cce957d4d11a64a4 82480 htmlwidgets/lib/jquery.dataTables.min.js
d742481ea42b37170210f377db83cf95407187a72c0f134cb0b912e419aae87c 56972 htmlwidgets/lib/jquery.layout.min.js
1751f65f18c4497771601702504b81736c149539dc1494c1178bf4253e6f7238 92641 htmlwidgets/lib/jquery.min.js
4ffd6540578225e13366f94b57a2a0e2d72527e0c5f74bd289711dad078a8618 7261 htmlwidgets/lib/my_svg_crowbar.js
1b1727021e0dc63edb50e89ff2e2bc8ceafeae74714490befd6df7f6c7da5370 102790 htmlwidgets/lib/popper.js
2227a011ce058eca6c97144dc333301123f451ee0e6742db1ff2b4d3a737ec35 157136 htmlwidgets/lib/run_timescape.js
f7d21d8f2519fc46de4ac28acc25eaf2074eec4dc6b507b8de6fe86c20b3c02e 1269 htmlwidgets/lib/timescape.css
f7d21d8f2519fc46de4ac28acc25eaf2074eec4dc6b507b8de6fe86c20b3c02e 1269 htmlwidgets/lib/timesweep.css
ed613d7c51136e70b1064e5416b8ea00fbadcf9e2de8956a47bb90b97debf11e 1336 htmlwidgets/lib/tippy.css
297e8c228fc43c4d586c481654438613a8eaeda4b0d66e49d1d32cb9d07d1b0d 24271 htmlwidgets/lib/tippy.js
4b328e42c558197d5b99d7727cfcc60bac9763fad660651230e8baf93f6067ed 52919 htmlwidgets/lib/underscore.js
ca6da7ae57c0927c65fccac18f29aae0ac83e1bb0c55c23cae904b7607756d4e 2638 htmlwidgets/lib/vanilla-dataTables.min.css
e703f43d271a85dc8bbda4ce03b4f8419e486e64b514b4d2b552680c9539f4ce 25490 htmlwidgets/lib/vanilla-dataTables.min.js
efe65478fa30916c0f3eb0845a0d5841347aa8f1f246db6755e55c59e279b1d4 9730 shinyapp/alpha_beta_table.R
fabdaa9457a4563356d6f45d4a5117aab1f468f4e7defe1a68c0af73321e02cb 4939 shinyapp/annotation.R
e8003e2f369db8f6600587acf065d8402105719945c6846b5366ff195bf35045 103224 shinyapp/app.R
a7429dd512161affd01c4428a48e7bbf2112a439e3b587968ed6622926730782 2222 shinyapp/check_demo.R
7352e6ed48fe384f0b84dcc865dc688545d41782dfdd2203184ffd6ca9df1c5c 4814 shinyapp/depth_computation.R
99fc4fbb252daee89884595e11a646bbd84a4d29b3b526fc6c966f73c8f19ac3 11218 shinyapp/filters_computation.R
d434e7f81d5cd12f9a382170bc5a58e433a9b236121463f79751e48f203e0aed 23289 shinyapp/inference_tab.R
d8fdad4cf376ef086b564af99971200c71dc7caffb5c2a6a4a641594053562e7 11987 shinyapp/info_help.R
a900fbeaaa0ecedbd6cc74e79fedce1b51c90148a8919344a56811a8703430e3 98 shinyapp/install
75196f37113c6d32d26bfb51046573b8db4efa45119d2c0f4899a8c11a6d6c0c 15631 shinyapp/load_and_save.R
bb837ed0288c8b45838456b0a5122dcc28c9b97c37dc08486780abac27257393 16579 shinyapp/make_lace_final_input.R
324abb9302bb95d7cfe86fd830fb2c36f8eadbb5ed95adc900f4f3ac429fcfbd 8833 shinyapp/pipeline_io_ctrl.R
8edc7d0d70999e43f3c25b3e3e5cb440f0a9d6725dd4a11aab86afbe2184ee51 5759 shinyapp/project_mgr.R
71e444b42574a6381784501a6ed23b9cf05e5b5c41cdafb36f25d1517521f5bf 13429 shinyapp/project_tab.R
3da12fdad46c77b8b25fe7d2f837f656fae452ce6d01cdd19290a5b6e6f005b9 4350 shinyapp/step3_explore_lace_input_data.R
