colByCopyNumber         colByCopyNumber
computeHclustPlotOrder
                        computeHclustPlotOrder
EnsemblStyle            EnsemblStyle
getBAFColumn            getBAFColumn
getChrColumn            getChrColumn
getColumn               getColumn
getCopyNumberColors     getCopyNumberColors
getCopyNumberColumn     getCopyNumberColumn
getEndColumn            getEndColumn
getIDColumn             getIDColumn
getLOHColumn            getLOHColumn
getLRRColumn            getLRRColumn
getPosColumn            getPosColumn
getSegmentValueColumn   getSegmentValueColumn
getStartColumn          getStartColumn
loadCopyNumberCalls     loadCopyNumberCalls
loadCopyNumberCallsCnmops
                        loadCopyNumberCallsCnmops
loadCopyNumberCallsCNVkit
                        loadCopyNumberCallsCNVkit
loadCopyNumberCallsDECoN
                        loadCopyNumberCallsDECoN
loadCopyNumberCallsDNAcopy
                        loadCopyNumberCallsDNAcopy
loadCopyNumberCallsPanelcnmops
                        loadCopyNumberCallsPanelcnmops
loadCopyNumberCallspennCNV
                        loadCopyNumberCallspennCNV
loadCopyNumberCallsSeg
                        loadCopyNumberCallsSeg
loadSNPData             loadSNPData
loadSNPDataDNAcopy      loadSNPDataDNAcopy
loadSNPDataFromVCF      loadSNPDataFromVCF
plotBAF                 plotBAF
plotCopyNumberCalls     plotCopyNumberCalls
plotCopyNumberCallsAsLines
                        plotCopyNumberCallsAsLines
plotCopyNumberSummary   plotCopyNumberSummary
plotLRR                 plotLRR
plotSingleCellCopyNumberCalls
                        plotSingleCellCopyNumberCalls
plotSingleCellCopyNumberSummary
                        plotSingleCellCopyNumberSummary
prepareLabels           prepareLabels
readHDF5Ztree           readHDF5Ztree
removeNAs               removeNAs
transformChr            transformChr
UCSCStyle               UCSCStyle
Ztree2Hclust            Ztree2Hclust
