Package: dmGsea
Type: Package
Title: Efficient Gene Set Enrichment Analysis for DNA Methylation Data
Version: 1.0.1
Authors@R: 
    c(person("Zongli","Xu",email="xuz@niehs.nih.gov",role=c("cre","aut"),
        comment=c(ORCID="0000-0002-9034-8902")),
    person("Alison","Motsinger-Reif",email="alison.motsinger-reif@nih.gov"
        ,role="aut"),
    person("Liang", "Niu", role="aut",email="niulg@ucmail.uc.edu")
    )
Description: The R package dmGsea provides efficient gene set
        enrichment analysis specifically for DNA methylation data. It
        addresses key biases, including probe dependency and varying
        probe numbers per gene. The package supports Illumina 450K,
        EPIC, and mouse methylation arrays. Users can also apply it to
        other omics data by supplying custom probe-to-gene mapping
        annotations. dmGsea is flexible, fast, and well-suited for
        large-scale epigenomic studies.
License: Artistic-2.0
biocViews: GeneSetEnrichment,
        Pathways,DNAMethylation,Proteomics,Sequencing,
        CopyNumberVariation, GeneExpression, GenomicVariation, Coverage
Depends: utils,stats,parallel,Matrix,SummarizedExperiment,methods,R(>=
        3.5.0)
Suggests: msigdbr, org.Hs.eg.db, org.Mm.eg.db, minfi, knitr, rmarkdown,
        GO.db, KEGGREST, testthat,
        IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, BiocStyle, RUnit
Imports: dqrng,AnnotationDbi,poolr,BiasedUrn,Seqinfo
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/Bioconductor/dmGsea
BugReports: https://github.com/Bioconductor/dmGsea/issues
git_url: https://git.bioconductor.org/packages/dmGsea
NeedsCompilation: no
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-31 13:46:15 UTC
RemoteUrl: https://github.com/bioc/dmGsea
RemoteRef: RELEASE_3_22
RemoteSha: 8ba045bdc2ff3919bec5819cb040d3f072ee4a5e
Packaged: 2025-11-13 07:54:14 UTC; root
Author: Zongli Xu [cre, aut] (ORCID: <https://orcid.org/0000-0002-9034-8902>),
  Alison Motsinger-Reif [aut],
  Liang Niu [aut]
Maintainer: Zongli Xu <xuz@niehs.nih.gov>
Built: R 4.5.2; ; 2025-11-13 07:59:38 UTC; windows
