miaDash

This is the development version of miaDash; to use it, please install the devel version of Bioconductor.

Shiny app for the interactive analysis and exploration of microbiome data

Bioconductor version: Development (3.21)

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

Author: Giulio Benedetti [aut, cre] ORCID: 0000-0002-8732-7692 , Akewak Jeba [ctb] ORCID: 0009-0007-1347-7552 , Leo Lahti [aut] ORCID: 0000-0001-5537-637X

Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>

Citation (from within R, enter citation("miaDash")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miaDash")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miaDash")

miaDash	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, GUI, Microbiome, ShinyApps, Software, Visualization
Version	0.99.11
In Bioconductor since	BioC 3.21 (R-4.5)
License	Artistic-2.0
Depends	R (>= 4.4.0), iSEE, shiny
Imports	ape, biomformat, htmltools, iSEEtree(>= 1.1.4), mia, rintrojs, scater, shinydashboard, shinyjs, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan
System Requirements
URL	https://github.com/microbiome/miaDash
Bug Reports	https://github.com/microbiome/miaDash/issues

Suggests	BiocStyle, knitr, philr, remotes, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miaDash_0.99.11.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)	miaDash_0.99.11.tgz
macOS Binary (arm64)	miaDash_0.99.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miaDash
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miaDash
Bioc Package Browser	https://code.bioconductor.org/browse/miaDash/
Package Short Url	https://bioconductor.org/packages/miaDash/
Package Downloads Report	Download Stats