Lheuristic
This is the development version of Lheuristic; to use it, please install the devel version of Bioconductor.
Detection of scatterplots with L-shaped pattern
Bioconductor version: Development (3.21)
The Lheuristic package identifies scatterpots that follow and L-shaped, negative distribution. It can be used to identify genes regulated by methylation by integration of an expression and a methylation array. The package uses two different methods to detect expression and methyaltion L- shapped scatterplots. The parameters can be changed to detect other scatterplot patterns.
Author: Sanchez Pla Alex [aut, cre]
, Miro Cau Berta [aut]
Maintainer: Sanchez Pla Alex <asanchez at ub.edu>
citation("Lheuristic")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Lheuristic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Lheuristic")| L-shaped selection from methylation and expression | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text | |
| LICENSE | Text |
Details
| biocViews | DNAMethylation, MethylationArray, Software, StatisticalMethod |
| Version | 0.99.01 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0) |
| Imports | Hmisc, stats, energy, grDevices, graphics, utils, MultiAssayExperiment, ggplot2, ggpubr |
| System Requirements | |
| URL | https://github.com/ASPresearch/Lheuristic |
| Bug Reports | https://github.com/ASPresearch/Lheuristic/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Lheuristic_0.99.01.tar.gz |
| Windows Binary (x86_64) | Lheuristic_0.99.01.zip (64-bit only) |
| macOS Binary (x86_64) | Lheuristic_0.99.01.tgz |
| macOS Binary (arm64) | Lheuristic_0.99.01.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Lheuristic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Lheuristic |
| Bioc Package Browser | https://code.bioconductor.org/browse/Lheuristic/ |
| Package Short Url | https://bioconductor.org/packages/Lheuristic/ |
| Package Downloads Report | Download Stats |