# stJoincount - Join count statistic for quantifying spatial correlation between clusters

## Documentation for package ‘stJoincount’ version 1.9.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

customDict | Generate dict of cluster names
dataPrepFromSeurat | Data Preparation from Seurat Object
dataPrepFromSpE | Data Preparation from SpatialExperiment Object
extentBuffer | Find optimal number of buffer for extent
joincountAnalysis | Join count analysis
mosaicIntPlot | Mosaic plot
rasterizeEachCluster | Create a raster object from a labeled sample
rasterPrep | Raster layer preparation
resolutionCalc | Resolution calculation
zscoreMatrix | Generate Z-score matrix
zscorePlot | Visulization of Z-score heatmap.