# A SummarizedExperiment for Ivy-GAP data

## Documentation for package ‘ivygapSE’ version 1.29.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

designOverview | render design overview
exprByType | simple plot of expression values by structure/expression-based selection in IvyGAP
getRefLimma | provide access to a limma analysis of RNA-seq profiles for reference histology samples
ivyGlimpse | simple app to explore image property quantifications in relation to survival and expression
ivySE | ivySE: SummarizedExperiment for IvyGAP expression data and metadata
makeGeneSets | demonstration of gene set construction for ivyGlimpse app
nomenclat | render design overview
subBlockDetails | helper functions for data access
tumorDetails | helper functions for data access
vocab | helper functions for data access