iSEE extension for panels related to differential expression analysis

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Documentation for package ‘iSEEde’ version 1.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.cacheCommonInfo-method	The DETable class
.cacheCommonInfo-method	The LogFCLogFCPlot class
.cacheCommonInfo-method	The MAPlot class
.cacheCommonInfo-method	The VolcanoPlot class
.createObservers-method	The DETable class
.createObservers-method	The LogFCLogFCPlot class
.createObservers-method	The MAPlot class
.createObservers-method	The VolcanoPlot class
.defineDataInterface-method	The DETable class
.defineDataInterface-method	The LogFCLogFCPlot class
.defineDataInterface-method	The MAPlot class
.defineDataInterface-method	The VolcanoPlot class
.fullName-method	The DETable class
.fullName-method	The LogFCLogFCPlot class
.fullName-method	The MAPlot class
.fullName-method	The VolcanoPlot class
.generateDotPlotData-method	The LogFCLogFCPlot class
.generateDotPlotData-method	The MAPlot class
.generateDotPlotData-method	The VolcanoPlot class
.generateTable-method	The DETable class
.panelColor-method	The DETable class
.panelColor-method	The LogFCLogFCPlot class
.panelColor-method	The MAPlot class
.panelColor-method	The VolcanoPlot class
.refineParameters-method	The DETable class
.refineParameters-method	The LogFCLogFCPlot class
.refineParameters-method	The MAPlot class
.refineParameters-method	The VolcanoPlot class
averageLog2	Generics for Differential Expression Results
averageLog2-method	The iSEEDESeq2Results class
averageLog2-method	The iSEELimmaResults class
averageLog2-method	The iSEEedgeRResults class
contrastResults	Extract contrast results embedded in a SummarizedExperiment object
contrastResultsNames	Extract contrast results embedded in a SummarizedExperiment object
de-generics	Generics for Differential Expression Results
DETable	The DETable class
DETable-class	The DETable class
embedContrastResults	Generics for Embbedding Results into a SummarizedExperiment Object
embedContrastResults-method	The iSEEDESeq2Results class
embedContrastResults-method	The iSEELimmaResults class
embedContrastResults-method	The iSEEedgeRResults class
embedContrastResults-method	Generics for Embbedding Results into a SummarizedExperiment Object
embedContrastResultsMethods	Generics for Embbedding Results into a SummarizedExperiment Object
initialize-method	The DETable class
initialize-method	The LogFCLogFCPlot class
initialize-method	The MAPlot class
initialize-method	The VolcanoPlot class
iSEEDESeq2Results	The iSEEDESeq2Results class
iSEEDESeq2Results-class	The iSEEDESeq2Results class
iSEEedgeRResults	The iSEEedgeRResults class
iSEEedgeRResults-class	The iSEEedgeRResults class
iSEELimmaResults	The iSEELimmaResults class
iSEELimmaResults-class	The iSEELimmaResults class
log2FoldChange	Generics for Differential Expression Results
log2FoldChange-method	The iSEEDESeq2Results class
log2FoldChange-method	The iSEELimmaResults class
log2FoldChange-method	The iSEEedgeRResults class
LogFCLogFCPlot	The LogFCLogFCPlot class
LogFCLogFCPlot-class	The LogFCLogFCPlot class
MAPlot	The MAPlot class
MAPlot-class	The MAPlot class
pValue	Generics for Differential Expression Results
pValue-method	The iSEEDESeq2Results class
pValue-method	The iSEELimmaResults class
pValue-method	The iSEEedgeRResults class
showAsCell-method	The iSEEDESeq2Results class
showAsCell-method	The iSEELimmaResults class
showAsCell-method	The iSEEedgeRResults class
utils-SummarizedExperiment	Generics for Embbedding Results into a SummarizedExperiment Object
VolcanoPlot	The VolcanoPlot class
VolcanoPlot-class	The VolcanoPlot class