Labels normalized cells for CyTOF data and assigns probabilities for each label

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Documentation for package ‘cytofQC’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cytofQC-package	cytofQC: Event labeling for quality control of CyTOF data
cytofHist	Returns histogram for grouped data
cytofQC	cytofQC: Event labeling for quality control of CyTOF data
cytofQCreport	Generate a cytofQC report
gbmLabel	Returns the final label assignments for a parameter using a gradient boosting machine
initial	Returns a specified object from the cytofQC SingleCellExperiment
initialBead	Preliminary bead classification
initialDead	Preliminary viability classification
initialDebris	Preliminary debris classification
initialDoublet	Preliminary doublet classification
initialGuess	General preliminary classification.
label	Returns a specified object from the cytofQC SingleCellExperiment
labelQC	Returns the final label assignments the specified parameters
modelData	Returns indices for data to be used to create the final classification model
plotInitialGuess	Plot preliminary classification from initialGuess
probs	Returns a specified object from the cytofQC SingleCellExperiment
readCytof	Read in a dataset and prepare it for analysis
rfLabel	Returns the final label assignments for a parameter using a random forest
s3vmLabel	Returns the final label assignments for a parameter using a semi-supervised support vector machine
scores	Returns a specified object from the cytofQC SingleCellExperiment
svmLabel	Returns the final label assignments for a parameter using a support vector machine
tech	Returns a specified object from the cytofQC SingleCellExperiment