Tools for Molecular Signatures
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Documentation for package ‘TMSig’ version 1.2.0
Help Pages
| cameraColorFun | Color Functions for enrichmap |
| cameraPR.matrix | Competitive Gene Set Test Accounting for Inter-gene Correlation |
| clusterSets | Similarity-Based Clustering of Sets |
| decomposeSets | Decompose Pairs of Overlapping Sets Into 3 Disjoint Parts |
| enrichmap | Set Enrichment Bubble Heatmap |
| enrichmapColorFunctions | Color Functions for enrichmap |
| extendRangeNum | Extend the Range of Values Out to the Nearest Digit |
| filterSets | Filter a Named List of Sets by Size |
| filterSets-method | Filter a Named List of Sets by Size |
| gseaColorFun | Color Functions for enrichmap |
| incidenceToList | Convert Incidence Matrix to a Named List of Sets |
| invertSets | Invert a List of Sets, Transposing Sets and Elements |
| invertSets-method | Invert a List of Sets, Transposing Sets and Elements |
| readGMT | Read GMT File to a Named List of Sets |
| similarity | Construct a Matrix of Pairwise Set Similarity Coefficients |
| sparseIncidence | Construct a Sparse Incidence Matrix |
| sparseIncidence-method | Construct a Sparse Incidence Matrix |