Spatially-aware quality control for spatial transcriptomics
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Documentation for package ‘SpotSweeper’ version 1.4.0
Help Pages
| biased_spots | Biased Spots Data |
| DLPFC_artifact | human DLPFC dataset with a technical artifact (hangnail). |
| findArtifacts | Identify and annotate artifacts in spatial transcriptomics data |
| flagVisiumOutliers | Flag Visium Outliers in SpatialExperiment Objects |
| localOutliers | localOutliers Function |
| localVariance | localVariance Function |
| plotQCmetrics | Plot QC metrics for a Single Sample in a SpatialExperiment object |
| plotQCpdf | Plot Outlier Metrics to PDF |