associationAlterations | associationAlterations |
associationPrognosis | associationPrognosis |
associationSignatures | associationSignatures |
association_mutations | List providing mutations as binary variables and signatures assignments for 656 breast cancer patients |
association_survival | List providing clinical data and signatures assignments for 359 pancreatic cancer patients |
background | Germline replication error |
background2 | COSMIC replication error |
cn_example_reduced | A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function |
getCNCounts | getCNCounts |
getIDCounts | getIDCounts |
getMNVCounts | getMNVCounts |
getSBSCounts | getSBSCounts |
groupsCNPlot | groupsCNPlot |
groupsCXPlot | groupsCXPlot |
groupsIDPlot | groupsIDPlot |
groupsMNVPlot | groupsMNVPlot |
groupsSBSPlot | groupsSBSPlot |
id_example_reduced | A reduced version of the indel data for 3 samples in the format compatible with the import function |
patients | Point mutations for 560 breast tumors |
patientsCNPlot | patientsCNPlot |
patientsCXPlot | patientsCXPlot |
patientsIDPlot | patientsIDPlot |
patientsMNVPlot | patientsMNVPlot |
patientsSBSPlot | patientsSBSPlot |
plot_data_examples | List data structure to run examples |
sbs_assignments | SBS assignments for 560 breast tumors |
signaturesAssignment | signaturesAssignment |
signaturesClustering | signaturesClustering |
signaturesCNPlot | signaturesCNPlot |
signaturesCV | signaturesCV |
signaturesCXPlot | signaturesCXPlot |
signaturesDecomposition | signaturesDecomposition |
signaturesIDPlot | signaturesIDPlot |
signaturesMNVPlot | signaturesMNVPlot |
signaturesSBSPlot | signaturesSBSPlot |
signaturesSignificance | signaturesSignificance |
ssm560_reduced | A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function |