Bayesian analysis of longitudinal metabolomics data

---

Documentation for package ‘MetaboDynamics’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cluster_dynamics	cluster dynamics profiles of metabolites
compare_dynamics	Comparison of metabolite dynamics clusters under different experimental conditions
compare_metabolites	Comparison of metabolite sets between dynamics clusters of different experimental conditions
diagnostics_dynamics	Extracts diagnostic criteria from numeric fit of Bayesian model of dynamics
estimates_dynamics	Extracts parameter estimates from numeric fit of Bayesian model of dynamics
fit_dynamics_model	Fits dynamics model
heatmap_dynamics	plot bubble heatmap from the numerical fit of compare_dynamics()
heatmap_metabolites	plot heatmap from comparison of metabolite composition compare_metabolites()
longitudinalMetabolomics	A simulated data set of longitudinal concentration tables of metabolites.
metabolite_modules	KEGG Query Results of experimental metabolites
modules_compounds	Background KEGG Query Results Of Functional Modules
ORA_hypergeometric	OverRepresentationAnalysis with a hypergeometric model
plot_cluster	visualize clustering solution of cluster_dynamics()
plot_diagnostics	Plot diagnostic criteria of numerical fit of Bayesian model of dynamics
plot_estimates	Visualization of parameter estimates from numeric fit of Bayesian model of dynamics
plot_ORA	Plot results of over-representation analysis with ORA_hypergeometric()
plot_PPC	Plots posterior predictive check of numerical fit of Bayesian dynamics model