Package: CircSeqAlignTk
Type: Package
Title: A toolkit for end-to-end analysis of RNA-seq data for circular
        genomes
Version: 1.10.0
Authors@R: 
    c(person("Jianqiang", "Sun",
                email = "sun@biunit.dev",
                role = c("cre", "aut"),
           comment = c(ORCID = "0000-0002-3438-3199")),
      person("Xi", "Fu", role = c("ctb")),
      person("Wei", "Cao", role = c("ctb")))
Description: 
    CircSeqAlignTk is designed for end-to-end RNA-Seq data analysis
    of circular genome sequences, from alignment to visualization.
    It mainly targets viroids which are composed of 246-401 nt circular RNAs.
    In addition, CircSeqAlignTk implements a tidy interface
    to generate synthetic sequencing data that mimic real RNA-Seq data,
    allowing developers to evaluate the performance of alignment tools
    and workflows.
Depends: R (>= 4.2)
Imports: stats, tools, utils, R.utils, methods, S4Vectors, rlang,
        magrittr, dplyr, tidyr, ggplot2, BiocGenerics, Biostrings,
        IRanges, ShortRead, Rsamtools, Rbowtie2, Rhisat2, shiny,
        shinyFiles, shinyjs, plotly, parallel, htmltools
Suggests: knitr, rmarkdown, testthat, BiocStyle
VignetteBuilder: knitr
biocViews: Sequencing, SmallRNA, Alignment, Software
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
URL: https://github.com/jsun/CircSeqAlignTk
BugReports: https://github.com/jsun/CircSeqAlignTk/issues
git_url: https://git.bioconductor.org/packages/CircSeqAlignTk
git_branch: RELEASE_3_21
git_last_commit: a216878
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-15 21:32:10 UTC; biocbuild
Author: Jianqiang Sun [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-3438-3199>),
  Xi Fu [ctb],
  Wei Cao [ctb]
Maintainer: Jianqiang Sun <sun@biunit.dev>
Built: R 4.5.0; ; 2025-04-16 05:57:40 UTC; unix
