Data companion to CTexploreR

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Documentation for package ‘CTdata’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

all_genes	All genes genes description table
CCLE_correlation_matrix	Gene correlations in CCLE cancer cell lines
CCLE_data	Genes expression data in CCLE
CTdata	All CTdata datasets
CT_genes	CT genes description table
CT_mean_methylation_in_tissues	CT genes' promoters mean methylation
CT_methylation_in_tissues	Methylation of CpGs within CT promoters
DAC_treated_cells	DE genes with/without demethylating agent
DAC_treated_cells_multimapping	DE genes treated or not with a demethylating agent
embryo_sce_Petropoulos	Embryo scRNAseq
embryo_sce_Zhu	Embryo scRNAseq
FGC_sce	Fetal gonad scRNAseq
GTEX_data	Genes expression in GTEX
hESC_data	Genes expression in hESC
HPA_cell_type_specificities	Cell type specificities (from HPA)
makeTags	A short function that returns the default CTdata tags and, if provided, additional data-specific tags.
mean_methylation_in_embryo	All genes' promoters mean methylation in embryos
mean_methylation_in_FGC	All genes' promoters mean methylation in FGC
mean_methylation_in_hESC	All genes' promoters mean methylation in hESC
mean_methylation_in_tissues	All genes' promoters mean methylation
methylation_in_embryo	Methylation of CpGs within all genes promoters in embryo
methylation_in_FGC	Methylation of CpGs within all genes promoters in FGC
methylation_in_hESC	Methylation of CpGs within all genes promoters in hESC
methylation_in_tissues	Methylation of CpGs within all genes promoters
normal_tissues_multimapping_data	Gene expression values in normal tissues
oocytes_sce	Oocytes scRNAseq
scRNAseq_HPA	Gene expression in human cell types
TCGA_CT_methylation	Methylation of CT promoters in TCGA samples
TCGA_methylation	Methylation of all genes promoters in TCGA samples
TCGA_TPM	Gene expression in TCGA samples
testis_sce	Testis scRNAseq data