Weighting protein-protein interactions
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Documentation for package ‘wppi’ version 1.16.0
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| common_neighbors | Shared neighbors of connected vertices |
| count_genes | Number of total genes in an ontology database |
| filter_annot_with_network | Filter ontology datasets using PPI network object |
| functional_annot | Functional similarity score based on ontology |
| graph_from_op | Igraph object from OmniPath network |
| in_omnipath | Check which genes of interest are or not in OmniPath |
| prioritization_genes | Candidate genes prioritization |
| process_annot | Processing of ontology annotations |
| random_walk | Random Walk with Restart (RWR) |
| score_candidate_genes_from_PPI | The full WPPI workflow |
| subgraph_op | Extract PPI subgraph by genes of interest |
| weighted_adj | Weighted adjacency matrix |
| wppi | The wppi package |
| wppi_data | Database knowledge for wppi |
| wppi_go_data | Retrieves data from Gene Ontology (GO) |
| wppi_hpo_data | Retrieves data from Human Phenotype Ontology (HPO) |
| wppi_omnipath_data | Protein-protein interaction data from OmniPath |