Differential Analysis of Single-cell Hi-C Data


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Documentation for package ‘scHiCcompare’ version 1.0.0

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ODC.bandnorm_chr20_1 scHi-C data from oligodendrocyte (ODC) cell type - chromosome 20 at 1 MB resolution
plot_HiCmatrix_heatmap Plot Hi-C Interaction Matrix Heatmap
plot_imputed_distance_diagnostic Plot Imputed Distance Diagnostic
print.scHiCcompare Print method for 'scHiCcompare' objects
pseudo_bulkHic Generate Pseudo-bulk Hi-C Data
read_files Read Files for scHi-C Dataset
scHiC.table_MG_chr22 scHi-C table from microglia (MG) cell type - chromosome 22 at 1 MB resolution
scHiC.table_ODC_chr22 scHi-C table from oligodendrocyte (ODC) cell type - chromosome 22 at 1 MB resolution
scHiCcompare ScHiCcompare: Differential Analysis of Single-Cell Hi-C Data
scHiCcompare_impute Random Forest Imputation with Pooling options for scHi-C Data
scHiC_bulk_compare Compare Bulk Hi-C Data
scHiC_table Create scHiC Interaction Frequency Table