Visual and interactive gene expression analysis

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Documentation for package ‘phantasus’ version 1.27.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

es	Example dataset
fgseaExample	Example pathway data.frame for fgsea tool
generatePreloadedSession	Generate files for preloaded session from a session link.
getES	Load ExpressionSet by GEO identifier
getGDS	Load ExpressionSet from GEO Datasets
getGSE	Load ExpressionSet from GEO Series
getPhantasusConf	Read Phantasus Config
read.gct	Reads ExpressionSet from a GCT file. Function is deprecated, please use phantasusLite:::readGct() instead
reparseCachedESs	Reparse cached expression sets from GEO.
servePhantasus	Serve phantasus.
setupPhantasus	Setup phantasus. Read user config file ( or create default one) and fill 'cache_root' using sources in 'file'.
write.gct	Saves ExpressionSet to a GCT file (version 1.3). Function is deprecated, please use phantasusLite:::writeGct() instead