Package: oligoClasses
Version: 1.69.0
Title: Classes for high-throughput arrays supported by oligo and crlmm
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com> and Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14)
Imports: BiocGenerics (>= 0.27.1), Biobase (>= 2.17.8), methods,
        graphics, IRanges (>= 2.5.17), GenomicRanges (>= 1.23.7),
        SummarizedExperiment, Biostrings (>= 2.23.6), affyio (>=
        1.23.2), foreach, BiocManager, utils, S4Vectors (>= 0.9.25),
        RSQLite, DBI, ff
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
Suggests: hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
        pd.genomewidesnp.5, pd.mapping50k.hind240,
        pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
        genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
        RUnit, human370v1cCrlmm, VanillaICE, crlmm
Description: This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R utils-general.R utils-lds.R
        utils-parallel.R methods-gSet.R initialize-methods.R
        methods-AlleleSet.R methods-AnnotatedDataFrame.R
        methods-FeatureSet.R methods-AssayData.R
        methods-SnpFeatureSet.R methods-oligoSnpSet.R
        methods-CopyNumberSet.R methods-CNSet.R methods-PDInfo.R
        methods-RangedDataCNV.R methods-SnpSet.R
        methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSet.R
        methods-BeadStudioSetList.R methods-gSetList.R
        methods-GRanges.R methods-SummarizedExperiment.R show-methods.R
        functions.R zzz.R
biocViews: Infrastructure
## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/oligoClasses
git_branch: devel
git_last_commit: 37e0a0e
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.21
Date/Publication: 2025-03-06
NeedsCompilation: no
Packaged: 2025-03-06 22:07:28 UTC; biocbuild
Built: R 4.5.0; ; 2025-03-07 03:25:51 UTC; unix
