Identification and analysis of miRNA sponge regulation
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Documentation for package ‘miRspongeR’ version 2.12.0
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| integrateMethod | Integrate method for identifying miRNA sponge interactions by integrating different methods |
| moduleDEA | Disease enrichment analysis of modules |
| moduleFEA | Functional GO, KEGG and Reactome enrichment analysis of modules |
| moduleSurvival | Survival analysis of modules |
| netModule | Identifying miRNA sponge modules from network |
| precomputed_null_model | A null model for testing purposes in SPONGE R package |
| querymiRTargetbinding | Query miRNA-target interactions by combining expression data and putative miRNA-target interactions |
| sample_cor_network | Identifying sample-sample correlation network |
| spongeMethod | Identifying miRNA sponge interactions |
| spongeValidate | Validation of computationally predicted miRNA sponge interactions |
| sponge_sample_specific | Identifying sample-specific miRNA sponge interactions |