A SummarizedExperiment for Ivy-GAP data

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Documentation for package ‘ivygapSE’ version 1.30.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

designOverview	render design overview
exprByType	simple plot of expression values by structure/expression-based selection in IvyGAP
getRefLimma	provide access to a limma analysis of RNA-seq profiles for reference histology samples
ivyGlimpse	simple app to explore image property quantifications in relation to survival and expression
ivySE	ivySE: SummarizedExperiment for IvyGAP expression data and metadata
makeGeneSets	demonstration of gene set construction for ivyGlimpse app
nomenclat	render design overview
subBlockDetails	helper functions for data access
tumorDetails	helper functions for data access
vocab	helper functions for data access