# Cell-Type-Specific Power Assessment

## Documentation for package ‘cypress’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cypress-package | cypress: cell-type-specific power assessment
AllClasses | Classes for cypress Package
asdPower | Power calculation results From ASD data
asd_nopropPower | Power calculation results From ASD data
asd_noprop_param | Simulation parameters estimated from ASD study
asd_param | Simulation parameters estimated from ASD study
ASD_prop | SimFromData example raw input data
ASD_prop_se | SimFromData example raw input data
cypress | cypress: cell-type-specific power assessment
cypress-class | Classes for cypress Package
cypress-methods | Get a slot from cypress output
cypress_out-class | Classes for cypress Package
est_out-class | Classes for cypress Package
getcypress | Get a slot from cypress output
getcypress-method | Get a slot from cypress output
GSE60424Power | Power calculation results from immune-related disease (IAD) study (GSE60424)
GSE60424_param | Simulation parameters estimated from immune-related disease (IAD) study (GSE60424)
iad_param | Power calculation results from immune-related disease (IAD) study (GSE60424)
ibdPower | Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_param | Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_propPower | Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_prop_param | Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
plotFDC | plotFDC: Generate FDC results figure
plotPower | plotPower: Generate statistical power results figure
plotTDR | plotTDR: Generate TDR results figure
quickParaASD | Simulation parameters estimated from ASD study
quickParaGSE60424 | Simulation parameters estimated from immune-related disease (IAD) study (GSE60424)
quickParaIBD | Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
quickPower | Obtain pre-calculated results from three available datasets
quickPowerASD | Power calculation results From ASD data
quickPowerGSE60424 | Power calculation results from immune-related disease (IAD) study (GSE60424)
quickPowerIBD | Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
setcypress | Get a slot from cypress output
setcypress-method | Get a slot from cypress output
show-method | Get a slot from cypress output
simFromData | Power calculation results on input data
simFromParam | Power calculation results on pre-calculated parameters