RImmPort: Enabling Ready-for-analysis Immunology Research Data

---

Documentation for package ‘RImmPort’ version 1.36.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

RImmPort-package	RImmPort: Enabling ready-for-analysis immunology research data
Adverse Events Domain	Adverse Events Domain
AE	Adverse Events Domain Variables
APMH	Associated Persons Medical History Domain Variables
Associated Persons Medical History Domain	Associated Persons Medical History Domain
buildNewSqliteDb	buildNewSqliteDb
Cellular Quantification Domain	Cellular Quantification Domain
CM	Concomitant Medications Domain Variables
Concomitant Medications Domain	Concomitant Medications Domain
Demographics Domain	Demographics Domain
DM	Demographics Domain Variables
DV	Protocol Deviations Domain Variables
Events	Events class
Events-class	Events class
EX	Exposure Domain Variables
Exposure Domain	Exposure Domain
FA	Findings About Domain Variables
Findings	Findings class
Findings About Domain	Findings About Domain
Findings-class	Findings class
Genetics Findings Domain	Genetics Findings Domain
getAssayDataOfStudies	Get specific assay data of one or more studies from the ImmPort database
getDomainCode	Get code of a specific domain
getDomainDataOfStudies	Get specific domain data of one or more studies from the ImmPort database
getListOfAssayTypes	Get a list of Assay Types
getListOfDomains	Get names of all domains and their codes
getListOfStudies	Get a list of all studies
getStudiesWithSpecificAssayData	Get a list of studies that have specific assay type data
getStudiesWithSpecificDomainData	Get a list of studies that have specific domain data
getStudy	Get all data of a specific study from the ImmPort data source
Interventions	Interventions class
Interventions-class	Interventions class
Laboratory Test Results Domain	Laboratory Test Results Domain
LB	Laboratory Test Results Domain Variables
loadSerializedStudyData	Load the Serialized Data of a Study
Medical History Domain	Medical History Domain
mergeDomainAndSupplemental	Merge the Domain dataframe and Supplemental dataframe (long form)
MH	Medical History Domain Variables
Nucleic Acid Quantification Domain	Nucleic Acid Quantification Domain
PE	Physical Examination Domain Variables
PF	Genetics Findings Domain Variables
Physical Examination Domain	Physical Examination Domain
Protein Quantification Domain	Protein Quantification Domain
Protocol Deviations Domain	Protocol Deviations Domain
QS	Questionnaires Domain Variables
Questionnaires Domain	Questionnaires Domain
RImmPort	RImmPort: Enabling ready-for-analysis immunology research data
serialzeStudyData	Serialize the Study Data
setImmPortDataSource	Set ImmPort data ource
Skin Response Domain	Skin Response Domain
SpecialPurpose	Special Purpose class
SpecialPurpose-class	Special Purpose class
SR	Skin Response Domain Variables
Study	Study class
Study-class	Study class
SU	Substance Use Domain Variables
Subject Visits Domain	Subject Visits Domain
Substance Use Domain	Substance Use Domain
SUPP	Supplemental Variables
SUPPDV	Protocol Deviations Domain Supplemental Variables
SUPPFA	Findings About Domain Supplemental Variables
SUPPLB	Laboratory Test Results Domain Supplemental Variables
SUPPMH	Medical History Domain Supplemental Variables
SUPPPE	Physical Examination Domain Supplemental Variables
SUPPPF	Genetics Findings Domain Supplemental Variables
SUPPVS	Vital Signs Domain Supplemental Variables
SUPPZA	Protein Quantification Domain Supplemental Variables
SUPPZB	Cellular Quantification Domain Supplemental Variables
SUPPZC	Nucleic Acid Quantification Domain Supplemental Variables
SUPPZD	Titer Assay Results Domain Supplemental Variables
SV	Subject Visits Domain Variables
TA	Trial Arms Domain Variables
TI	Trial Inclusion Exclusion Criteria Domain Variables
Titer Assay Results Domain	Titer Assay Results Domain
Trial Arms Domain	Trial Arms Domain
Trial Inclusion Exclusion Criteria Domain	Trial Inclusion Exclusion Criteria Domain
Trial Summary Domain	Trial Summary Domain
Trial Visits Domain	Trial Visits Domain
TrialDesign	Trial Design class
TrialDesign-class	Trial Design class
TS	Trial Summary Domain Variables
TV	Trial Visits Domain Variables
Vital Signs Domain	Vital Signs Domain
VS	Vital Signs Domain Variables
ZA	Protein Quantification Domain Variables
ZB	Cellular Quantification Domain Variables
ZC	Nucleic Acid Quantification Domain Variables
ZD	Titer Assay Results Domain Variables