RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes

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Documentation for package ‘RESOLVE’ version 1.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

associationAlterations	associationAlterations
associationPrognosis	associationPrognosis
associationSignatures	associationSignatures
association_mutations	List providing mutations as binary variables and signatures assignments for 656 breast cancer patients
association_survival	List providing clinical data and signatures assignments for 359 pancreatic cancer patients
background	Germline replication error
background2	COSMIC replication error
cn_example_reduced	A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function
getCNCounts	getCNCounts
getIDCounts	getIDCounts
getMNVCounts	getMNVCounts
getSBSCounts	getSBSCounts
groupsCNPlot	groupsCNPlot
groupsCXPlot	groupsCXPlot
groupsIDPlot	groupsIDPlot
groupsMNVPlot	groupsMNVPlot
groupsSBSPlot	groupsSBSPlot
id_example_reduced	A reduced version of the indel data for 3 samples in the format compatible with the import function
patients	Point mutations for 560 breast tumors
patientsCNPlot	patientsCNPlot
patientsCXPlot	patientsCXPlot
patientsIDPlot	patientsIDPlot
patientsMNVPlot	patientsMNVPlot
patientsSBSPlot	patientsSBSPlot
plot_data_examples	List data structure to run examples
sbs_assignments	SBS assignments for 560 breast tumors
signaturesAssignment	signaturesAssignment
signaturesClustering	signaturesClustering
signaturesCNPlot	signaturesCNPlot
signaturesCV	signaturesCV
signaturesCXPlot	signaturesCXPlot
signaturesDecomposition	signaturesDecomposition
signaturesIDPlot	signaturesIDPlot
signaturesMNVPlot	signaturesMNVPlot
signaturesSBSPlot	signaturesSBSPlot
signaturesSignificance	signaturesSignificance
ssm560_reduced	A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function