Differential gene usage in immune repertoires

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Documentation for package ‘IgGeneUsage’ version 1.21.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

IgGeneUsage-package	The R package IgGeneUsage
CDR3_Epitopes	Net charge usage in CDR3 sequences of T-cell receptor repertoires disturbed by Influenza-A and CMV
DGU	Differential immunoglobulin (Ig) gene usage in immune repertoires
d_zibb_1	Simulated Ig gene usage data
d_zibb_2	Simulated Ig gene usage data
d_zibb_3	Simulated Ig gene usage data
d_zibb_4	Simulated Ig gene usage data
d_zibb_5	Simulated Ig gene usage data
d_zibb_6	Simulated Ig gene usage data
Ig	IGHV gene family usage in vaccine-challenged B-cell repertoires
IgGeneUsage	The R package IgGeneUsage
IGHV_HCV	IGHV gene usage in HCV+ and healthy individuals
Ig_SE	IGHV gene family usage in vaccine-challenged B-cell repertoires (SummarizedExperiment object)
LOO	Leave-one-out analysis for quantitative evaluation of the probability of DGU