.checkGenesets	dot-checkGenesets
.checkGTL	dot-checkGTL
.checkPPI	dot-checkPPI
.checkScores	dot-checkScores
.filterGenesets	dot-filterGenesets
.findSeparator	dot-findSeparator
.getClusterDatatable	dot-getClusterDatatable
.getGenesetDescriptions	dot-getGenesetDescriptions
.getNumberCores	dot-getNumberCores
.graphMetricsGenesetsDT	dot-graphMetricsGenesetsDT
.sepguesser	dot-sepguesser
buildClusterGraph	buildClusterGraph
buildGraph	buildGraph
buildHistogramData	buildHistogramData
calculateJaccard	calculateJaccard
calculateKappa	calculateKappa
calculateSorensenDice	calculateSorensenDice
checkInclusion	checkInclusion
clustering	clustering
deprecated	deprecated
distanceDendro	distanceDendro
distanceHeatmap	distanceHeatmap
enrichmentWordcloud	enrichmentWordcloud
fuzzyClustering	fuzzyClustering
GeDi	GeDi
getAdjacencyMatrix	getAdjacencyMatrix
getAnnotation	getAnnotation
getBipartiteGraph	getBipartiteGraph
getClusterAdjacencyMatrix	getClusterAdjacencyMatrix
getGenes	getGenes
getGraphTitle	getGraphTitle
getId	getId
getInteractionScore	getInteractionScore
getJaccardMatrix	getJaccardMatrix
getKappaMatrix	getKappaMatrix
getMeetMinMatrix	getMeetMinMatrix
getpMMMatrix	getpMMMatrix
getPPI	getPPI
getSorensenDiceMatrix	getSorensenDiceMatrix
getStringDB	getStringDB
goDistance	goDistance
gsHistogram	gsHistogram
kMeansClustering	kMeansClustering
kNN_clustering	kNN_clustering
louvainClustering	louvainClustering
macrophage_KEGG_example	macrophage_KEGG_example
macrophage_Reactome_example	macrophage_Reactome_example
macrophage_topGO_example	macrophage_topGO_example
macrophage_topGO_example_small	macrophage_topGO_example_small
markovClustering	markovClustering
pamClustering	pamClustering
pMMlocal	pMMlocal
ppi_macrophage_topGO_example_small	ppi_macrophage_topGO_example_small
prepareGenesetData	prepareGenesetData
sample_geneset	sample_geneset
sample_geneset_broken	sample_geneset_broken
sample_geneset_empty	sample_geneset_empty
sample_geneset_small	sample_geneset_small
scaleGO	scaleGO
scores_macrophage_topGO_example_small	scores_macrophage_topGO_example_small
seedFinding	seedFinding
