addDistNearestTSS	addDistNearestTSS
addMutCol	addMutCol
calcDistNearestTSS	calcDistNearestTSS
calculateEnrichement	calculateEnrichement
createBigWigDNAmetArray	createBigWigDNAmetArray
createIGVtrack	createIGVtrack
createMAE	createMAE
createMotifRelevantTfs	createMotifRelevantTfs
createSummaryDocument	createSummaryDocument
createTSVTemplates	createTSVTemplates
ELMER	ELMER
findMotifRegion	findMotifRegion
get.diff.meth	get.diff.meth
get.enriched.motif	get.enriched.motif
get.feature.probe	get.feature.probe
get.pair	get.pair
get.permu	get.permu
Get.Pvalue.p	Get.Pvalue.p
get.tab	get.tab
get.tabs	get.tabs
get.TFs	get.TFs
get450K	get450K
getClinic	getClinic
getExp	getExp
getExpSamples	getExpSamples
getGeneID	getGeneID
getMet	getMet
getMetSamples	getMetSamples
GetNearGenes	GetNearGenes
getRandomPairs	getRandomPairs
getRegionNearGenes	getRegionNearGenes
getRNAseq	getRNAseq
getSymbol	getSymbol
getTCGA	getTCGA
getTF	getTF
getTFBindingSites	getTFBindingSites
getTFtargets	getTFtargets
getTSS	getTSS
heatmapGene	heatmapGene
heatmapPairs	heatmapPairs
lm_eqn	lm_eqn
metBoxPlot	metBoxPlot
motif.enrichment.plot	motif.enrichment.plot
preAssociationProbeFiltering	preAssociationProbeFiltering
promoterMeth	promoterMeth
render_report	render_report
scatter	scatter
scatter.plot	scatter.plot
schematic.plot	schematic.plot
Stat.diff.meth	Stat.diff.meth
Stat.nonpara	Stat.nonpara
Stat.nonpara.permu	Stat.nonpara.permu
summarizeTF	summarizeTF
TCGA.pipe	TCGA.pipe
TF.rank.plot	TF.rank.plot
TFsurvival.plot	TFsurvival.plot
